Cell Area¶

Autogenerated Report: EPIC Cell Area Analysis¶

Website: https://github.com/AlphonsG/EPIC-BBox-Cell-Tracking¶

Image Series¶

Loaded 6 images.
Image 1: CF114 Run 1 Actual_T1_#11_RGB.tif
Image 2: CF114 Run 1 Actual_T2_#11_RGB.tif
Image 3: CF114 Run 1 Actual_T3_#11_RGB.tif
Image 4: CF114 Run 1 Actual_T4_#11_RGB.tif
Image 5: CF114 Run 1 Actual_T5_#11_RGB.tif
Image 6: CF114 Run 1 Actual_T6_#11_RGB.tif
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Cell Detections¶

Loaded 87 detections in total.
Image 1 contains 14 detections
Image 2 contains 14 detections
Image 3 contains 14 detections
Image 4 contains 15 detections
Image 5 contains 15 detections
Image 6 contains 15 detections

Average number of detections per image: 14
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Cell Tracks¶

Loaded 13 tracks in total.
Average length of tracks: 6 frames
Average starting frame of tracks: frame 1
Average ending frame of tracks: frame 6
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All Cell Masks¶

Out[14]:
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Cell Areas¶

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Minimum number of cells per image: 14
Maximum number of cells per image: 15
Average number of cells per image: 14.5 (Standard Deviation: 0.55)
Cell Swelling Over Time (μm²) (per cell ID)
1 2 3 4 5 6 7 8 9 10 11 12 13
Time (Minutes) 0 16616.40 10108.92 8800.47 4027.83 10676.22 6381.21 5183.48 2605.01 5065.44 1221.53 938.79 1759.55 2391.81
10 19023.76 11163.00 9775.86 4232.79 12046.89 6730.74 5868.81 3140.28 7032.69 1334.07 1142.84 1736.67 2575.72
20 20186.73 12173.16 11472.27 4629.90 13404.75 7232.16 6502.91 3493.47 5576.93 1621.38 1415.51 1774.19 2372.60
30 18945.99 13190.64 11739.45 4985.84 13937.28 7368.49 6898.19 3613.34 7666.78 1806.21 1561.90 1718.37 2443.97
40 19677.99 13758.86 12153.03 5260.34 14426.81 7668.62 7070.20 3976.59 8015.40 1840.98 1801.63 1740.33 2680.95
50 18684.30 14494.52 14088.26 5425.03 15307.95 8039.19 7656.72 3506.28 6262.26 1782.42 2036.79 1696.41 2647.10
Out[19]:
Cell Swelling Over Time (Normalized to t=0) (%) (per cell ID)
1 2 3 4 5 6 7 8 9 10 11 12 13
Time (Minutes) 0 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00
10 114.49 110.43 111.08 105.09 112.84 105.48 113.22 120.55 138.84 109.21 121.73 98.70 107.69
20 121.49 120.42 130.36 114.95 125.56 113.34 125.45 134.11 110.10 132.73 150.78 100.83 99.20
30 114.02 130.49 133.40 123.78 130.55 115.47 133.08 138.71 151.35 147.87 166.37 97.66 102.18
40 118.43 136.11 138.10 130.60 135.13 120.17 136.40 152.65 158.24 150.71 191.91 98.91 112.09
50 112.44 143.38 160.09 134.69 143.38 125.98 147.71 134.60 123.63 145.92 216.96 96.41 110.67
Out[21]:
Cell Swelling Area Under the Curve (μm² Minutes)
Cell ID 1 477424.12
2 312936.86
3 282924.86
4 119176.46
5 334039.05
6 181051.05
7 163801.01
8 86396.59
9 169778.25
10 40523.06
11 37048.35
12 43487.66
13 62963.44
Out[23]:
Cell Swelling Area Under the Curve (Normalized to t=0) (% Minutes)
Cell ID 1 2873.21
2 3095.65
3 3214.88
4 2958.83
5 3128.81
6 2837.25
7 3160.06
8 3316.56
9 3351.70
10 3317.42
11 3946.39
12 2471.53
13 2632.46
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